PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS71023.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family bHLH
Protein Properties Length: 549aa    MW: 59659.6 Da    PI: 7.5222
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS71023.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12371416454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +h e+Er+RR+++N++f  Lr ++P+       K++K++ L  A+ YI++L
  EPS71023.1 371 NHVEAERQRREKLNQRFYALRAVVPTV-----SKMDKSSLLGDAISYINEL 416
                 799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.2E-2943163IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142153.7E-9168205IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.984367416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-17368437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.24E-15370421No hitNo description
Gene3DG3DSA:4.10.280.104.7E-17371438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-10371416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-15373422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
SVLNTVMSSR PDPGSFWPIG RQISIPSPPP ARADHAVFSQ ENLQQRLIAL IEGAGESFTY  60
AIFWQDSATG FGVPSFLSWG DGYYKGEENR GNRKTTSSPS EQEHRKKVLR ELNSLVSGTP  120
AHSSLDEFVE EDVTDTEWFF LISMTHIFES GSGIPGQALY TSTPALGYGL QTLVCIPSSN  180
GVVELGSTAV IFQSLDLVKK VVSLFNFNGL DAASFSGTGS WGTPPPYLAQ HHRPSSSSLE  240
GSSLNAKQLG SASENPSACH QQTIGSRDFR FSSSSEMNHH PPTGNGNKKS PPASRGSNDD  300
GKHSSDVIAP SSGAPPPFKN NNGGVAESSD AHSDIEASVA KDAGSSKVVD PQKRPKKRGR  360
KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPTVSKM DKSSLLGDAI SYINELKSKL  420
QNSELDMEEM RAQLESLKKK KKKKEEEEEG LPPHNETKYS APSENKYGGG GATDIEVKII  480
GSDAMIRIQC SRKNHPAAKL MAAFKELDLD LHHASISVMN ESMIQRATVK MGATSFSQDQ  540
LRTTLMSKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A6e-50382084195Transcription factor MYC3
4rqw_B6e-50382084195Transcription factor MYC3
4rs9_A6e-50382084195Transcription factor MYC3
4yz6_A6e-50382084195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1352360KRPKKRGRK
2437443KKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082365.10.0PREDICTED: transcription factor MYC4-like
SwissprotO496871e-146MYC4_ARATH; Transcription factor MYC4
TrEMBLS8E5G00.0S8E5G0_9LAMI; Uncharacterized protein (Fragment)
STRINGVIT_02s0012g01320.t011e-176(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33002449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.11e-126bHLH family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]